On this page we provide links to software, protocols, and other resources for computational analysis, spatial analysis, flow cytometry, spectral cytometry, mass cytometry (CyTOF), and Imaging Mass Cytometry (IMC). You can also explore the Sydney Cytometry Extranet: this external resource site from the Sydney Cytometry Facility hosts a number of protocols and resources developed by facility staff and users. Non-facility users can request access using the form on the page linked above.
Analysis
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Computational analysis of single-cell cytometry data Here we provide resources to facilitate computational analysis of high-dimensional cytometry data, including Spectre, an R package that enables comprehensive end-to-end integration and analysis of high-dimensional cytometry data from different batches or experiments. GO TO PAGE
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Spatial analysis of Imagin Mass Cytometry (IMC) data Here we provide resources for cell segmentation and spatial analysis of IMC data. GO TO PAGE
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Technology and laboratory
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Flow and spectral cytometry Flow and spectral cytometry protocols, including panel design, voltages, spillover, and spreading error. GO TO PAGE
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Mass cytometry (CyTOF) Mass cytometry (CyTOF) protocols, including a lniks to a range of protocols from 'Mass Cytometry: Methods and Protocols (McGuire & Ashhurst). GO TO PAGE
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Imaging Mass Cytometry (IMC) Imaging Mass Cytometry (IMC) protocols. GO TO PAGE
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Code for the table structure adapted from https://satijalab.org/seurat